// Keywords: nucleotide-based, nucleotide sequence

initialize() {
	initializeSLiMOptions(nucleotideBased=T);
	defineConstant("L", initializeAncestralNucleotides("FASTA.txt"));
	initializeMutationTypeNuc("m1", 0.5, "f", 0.0);
	initializeGenomicElementType("g1", m1, 1.0, mmKimura(1.8e-07, 6e-08));
	initializeGenomicElement(g1, 0, L-1);
	initializeRecombinationRate(1e-8);
}
1 early() {
	sim.addSubpop("p1", 500);
}
2000 late() { sim.outputFixedMutations(); }
